Using advanced imaging to understand the brain

The Research

Publications

Artificial Intelligence Outcome Prediction in Neonates with Encephalopathy (AI-OPiNE).

Radiology. Artificial intelligence

Lew CO, Calabrese E, Chen JV, Tang F, Chaudhari G, Lee A, Faro J, Juul S, Mathur A, McKinstry RC, Wisnowski JL, Rauschecker A, Wu YW, Li Y

The University of California San Francisco Adult Longitudinal Post-Treatment Diffuse Glioma (UCSF-ALPTDG) MRI Dataset.

Radiology. Artificial intelligence

Fields BKK, Calabrese E, Mongan J, Cha S, Hess CP, Sugrue LP, Chang SM, Luks TL, Villanueva-Meyer JE, Rauschecker AM, Rudie JD

A multi-institutional meningioma MRI dataset for automated multi-sequence image segmentation.

Scientific data

LaBella D, Khanna O, McBurney-Lin S, Mclean R, Nedelec P, Rashid AS, Tahon NH, Altes T, Baid U, Bhalerao R, Dhemesh Y, Floyd S, Godfrey D, Hilal F, Janas A, Kazerooni A, Kent C, Kirkpatrick J, Kofler F, Leu K, Maleki N, Menze B, Pajot M, Reitman ZJ, Rudie JD, Saluja R, Velichko Y, Wang C, Warman PI, Sollmann N, Diffley D, Nandolia KK, Warren DI, Hussain A, Fehringer JP, Bronstein Y, Deptula L, Stein EG, Taherzadeh M, Portela de Oliveira E, Haughey A, Kontzialis M, Saba L, Turner B, Brüßeler MMT, Ansari S, Gkampenis A, Weiss DM, Mansour A, Shawali IH, Yordanov N, Stein JM, Hourani R, Moshebah MY, Abouelatta AM, Rizvi T, Willms K, Martin DC, Okar A, D'Anna G, Taha A, Sharifi Y, Faghani S, Kite D, Pinho M, Haider MA, Alonso-Basanta M, Villanueva-Meyer J, Rauschecker AM, Nada A, Aboian M, Flanders A, Bakas S, Calabrese E

Differences in educational opportunity predict white matter development.

Developmental cognitive neuroscience

Roy E, Van Rinsveld A, Nedelec P, Richie-Halford A, Rauschecker AM, Sugrue LP, Rokem A, McCandliss BD, Yeatman JD

Stereoelectroencephalography Electrode Implantation for Inpatient Workup of Treatment-Resistant Depression.

Neurosurgery

Starkweather CK, Sugrue LP, Cajigas I, Speidel B, Krystal AD, Scangos K, Chang EF

Automated neonatal nnU-Net brain MRI extractor trained on a large multi-institutional dataset.

Scientific reports

Chen JV, Li Y, Tang F, Chaudhari G, Lew C, Lee A, Rauschecker AM, Haskell-Mendoza AP, Wu YW, Calabrese E

C9orf72 gene networks in the human brain correlate with cortical thickness in C9-FTD and implicate vulnerable cell types.

Frontiers in neuroscience

Broce IJ, Sirkis DW, Nillo RM, Bonham LW, Lee SE, Miller BL, Castruita PA, Sturm VE, Sugrue LS, Desikan RS, Yokoyama JS

The University of California San Francisco, Brain Metastases Stereotactic Radiosurgery (UCSF-BMSR) MRI Dataset.

Radiology. Artificial intelligence

Rudie JD, Saluja R, Weiss DA, Nedelec P, Calabrese E, Colby JB, Laguna B, Mongan J, Braunstein S, Hess CP, Rauschecker AM, Sugrue LP, Villanueva-Meyer JE

Tractography-based DBS lead repositioning improves outcome in refractory OCD and depression.

Frontiers in human neuroscience

Basich-Pease G, Slepneva N, Frank AC, Norbu T, Morrison MA, Sugrue LP, Larson PS, Starr PA, Lee AM

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